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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9858712_9859729_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9858712 - 9859729
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCAA
5'SS Class:
major
3'SS Sequence:
TTAATTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTCTGTTAATT
Flanking Amino Acid:
LKEIHEKEVQGLQTKLTELT
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
65.8
41.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83
0.74
0.9
77.5
36.4
Minor 5ss
28.7
-2.4
3.4
37.4
47.3
Minor BPS
57.1
0.3
2.1
76.4
40.9

Associated Gene:

Gene:
RBBP8NL
Ensembl Gene ID:
ENSAPLG00000015008
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015630
9851394 - 9870173
18780