About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9859773_9860323_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9859773 - 9860323
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCAGT
5'SS Class:
major
3'SS Sequence:
TTTCTCACATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTTCTCACAT
Flanking Amino Acid:
KLTELTTEKCRDAQRIEELF
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
69.1
43.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.8
0.6
0.9
76
32.4
Minor 5ss
36.1
-1.6
3
49.5
46.5
Minor BPS
49.8
0.07
1.9
72.8
44.1

Associated Gene:

Gene:
RBBP8NL
Ensembl Gene ID:
ENSAPLG00000015008
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015630
9851394 - 9870173
18780