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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9860420_9860735_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9860420 - 9860735
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGTGGTAACA
Flanking Amino Acid:
LKENVKVLENRLRAGLCDRC
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
78.1
0.63
0.9
70
40.6
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
44.2
-0.4
2.6
62.92
43.8

Associated Gene:

Gene:
RBBP8NL
Ensembl Gene ID:
ENSAPLG00000015008
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015630
9851394 - 9870173
18780