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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9861236_9862463_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9861236 - 9862463
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CCCCTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCCTTCTCATTC
Flanking Amino Acid:
KEELKRLQSLEDRTKCPGAV
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.4
0.53
0.7
67.3
26.2
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
45.5
-0.3
1.8
49
42.3

Associated Gene:

Gene:
RBBP8NL
Ensembl Gene ID:
ENSAPLG00000015008
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015630
9851394 - 9870173
18780