Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9867606_9867936_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9867606 - 9867936

Intron Length:

331

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTGGTTTG

5'SS Class:

major

3'SS Sequence:

CTGCTCGGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAG

U12 Branch Point Sequence:

TGTAGGCTGACT

Flanking Amino Acid:

SDEADTTDSEVAAPCEHDVL

Intron Amino Acid Position:

601

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.2

70.9

41.9

Major BPS

-0

1.8

57.4

49.1

Major PPT

0.38

40.1

Minor 5ss

38.8

-1.3

49.5

46.8

Minor BPS

40.9

-0.6

2.6

65.63

44.7

Associated Gene:

Gene:

RBBP8NL

Ensembl Gene ID:

ENSAPLG00000015008

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015630

9851394 - 9870173

18780