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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9890374_9890552_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9890374 - 9890552
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
CTTACAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTTCTTACAA
Flanking Amino Acid:
EDIVEYASVQRTKNISGSPR
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.9
34.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
74.3
0.55
0.9
66.9
38.1
Minor 5ss
45.1
-0.5
3.1
67.5
43.4
Minor BPS
60.6
0.33
1.7
71.75
40.6

Associated Gene:

Gene:
CABLES2
Ensembl Gene ID:
ENSAPLG00000025571
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032644
9875520 - 9900024
24505