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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9890646_9891363_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9890646 - 9891363
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCCTGATCT
Flanking Amino Acid:
NMRQYDTKNSRIVLICAKRT
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.7
0.65
0.8
71.5
33
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
68
0.64
1.7
86.25
39.3

Associated Gene:

Gene:
CABLES2
Ensembl Gene ID:
ENSAPLG00000025571
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032644
9875520 - 9900024
24505