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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9892985_9893629_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9892985 - 9893629
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
TCCCCTATAACT
Flanking Amino Acid:
EGVELGADGKVVSYAKFLYP
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
87.5
0.84
0.9
90.6
22.1
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
59.2
0.37
1.7
74
42.9

Associated Gene:

Gene:
CABLES2
Ensembl Gene ID:
ENSAPLG00000025571
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032644
9875520 - 9900024
24505