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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9894654_9895054_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9894654 - 9895054
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAATAATACACT
Flanking Amino Acid:
KRVLIFASYMTTVIEYVKPS
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.9
0.65
0.9
75.9
38
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
40.4
-0.6
2.3
58.96
43.3

Associated Gene:

Gene:
CABLES2
Ensembl Gene ID:
ENSAPLG00000025571
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032644
9875520 - 9900024
24505