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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9895162_9896377_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9895162 - 9896377
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTATTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
HIKLTLSKIRSLKREMRNLS
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.8
0.65
0.8
76.3
31
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
CABLES2
Ensembl Gene ID:
ENSAPLG00000025571
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032644
9875520 - 9900024
24505