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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9901513_9905726_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9901513 - 9905726
Intron Length:
4214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTTTTTCAA
5'SS Class:
weak_major
3'SS Sequence:
AAGGATTTAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATA
Flanking Amino Acid:
ASIQINISEVTCFKNASLCM
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.2
0.1
1.2
54.5
38
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
58.6
0.19
1.1
51.3
46
Minor 5ss
37.8
-1.4
2.6
42.5
38.4
Minor BPS
69.3
0.6
1.4
75.77
36

Associated Gene:

Gene:
RPS21
Ensembl Gene ID:
ENSAPLG00000002422
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002430
9900534 - 9905948
5415