Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9991560_9991752_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9991560 - 9991752

Intron Length:

193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

AAGTCCTCACCT

Flanking Amino Acid:

LMTADPSLAPGSCACRAYVE

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.3

34.6

Major BPS

72.4

0.56

73.5

32.5

Major PPT

83.7

0.76

0.7

76.2

32.4

Minor 5ss

-2.1

2.6

39.1

38.9

Minor BPS

55.5

0.25

1.9

72.06

44.4

Associated Gene:

Gene:

LAMA5

Ensembl Gene ID:

ENSAPLG00000010163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021580

9985841 - 10022668

36828

ENSAPLT00000010775

9985841 - 10022760

36920

ENSAPLT00000021929

9985841 - 10022668

36828