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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9992388_9992782_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9992388 - 9992782
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGAACAA
U12 Branch Point Sequence:
GAGGGAACAAGC
Flanking Amino Acid:
TISGIAECQQGDGQCFCKPN
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
41.7
-0.5
1.2
41.1
39.7
Major PPT
74.8
0.56
0.8
73.3
31.7
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
28.5
-1.6
2
30.58
34.8

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010775
9985841 - 10022760
36920
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828