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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9992889_9993583_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9992889 - 9993583
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
GGAATGTAAACA
Flanking Amino Acid:
MENANYFGCQGCRCDVGGSL
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
74.7
0.56
0.8
68.4
32
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
42
-0.6
2.2
50.06
40.7

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920
ENSAPLT00000021929
9985841 - 10022668
36828