Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9993684_9993955_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9993684 - 9993955

Intron Length:

272

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGCTGC

5'SS Class:

major

3'SS Sequence:

TTCTCTTCCGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGGTAAT

U12 Branch Point Sequence:

TTCCAGATAACT

Flanking Amino Acid:

RQSTRGPTCSQPARDHYFPD

Intron Amino Acid Position:

346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

58.2

42.2

Major BPS

60.4

0.26

1.3

61.4

43.2

Major PPT

84.3

0.77

0.7

80.4

24.9

Minor 5ss

46.4

-0.4

2.8

64.5

Minor BPS

45.7

-0.2

2.4

71.53

44.7

Associated Gene:

Gene:

LAMA5

Ensembl Gene ID:

ENSAPLG00000010163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021929

9985841 - 10022668

36828

ENSAPLT00000021580

9985841 - 10022668

36828

ENSAPLT00000010775

9985841 - 10022760

36920