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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9999118_9999639_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9999118 - 9999639
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCAATGCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAATG
Flanking Amino Acid:
YQPAPEQATQNCLLYKYLSV
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.7
0.44
0.9
66.1
40.5
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
63.5
0.29
1.6
66.82
41.6

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920