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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_100039_100076_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
100039 - 100076
Intron Length:
38

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAAGATCT
5'SS Class:
major
3'SS Sequence:
CTGAAATGAAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TGTTGCTGAAAT
Flanking Amino Acid:
TWTPILPNFKGTITFPRRIS
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
70.3
41.4
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
42.8
-0.4
1.7
39.5
42.5
Minor 5ss
29.8
-2.3
4
40.6
45.1
Minor BPS
57.1
0.3
2
79.39
42

Associated Gene:

Gene:
GNB1
Ensembl Gene ID:
ENSAPLG00000011035
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011534
100002 - 118409
18408