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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_10066_10942_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10066 - 10942
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ATACACTAAATC
Flanking Amino Acid:
PRHVDSDLKIGFYSINHTDC
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
79.7
0.67
0.7
75.7
26.5
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
49
-0
1.8
60.38
38.5

Associated Gene:

Gene:
MMP23B
Ensembl Gene ID:
ENSAPLG00000012333
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012849
7952 - 15233
7282