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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_100731_103885_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
100731 - 103885
Intron Length:
3155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATGTTCTTATTT
Flanking Amino Acid:
VWDTLKADRAGVLAGHDNRV
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85
0.79
0.7
80.7
30.3
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
64.5
0.53
1.6
77.51
39.6

Associated Gene:

Gene:
GNB1
Ensembl Gene ID:
ENSAPLG00000011035
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011534
100002 - 118409
18408