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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_104103_104611_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104103 - 104611
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ACCCTCATTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTTATT
Flanking Amino Acid:
GHESDINAICFFPNGNAFAT
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
61.5
0.26
1.1
60.6
33.5
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
63.1
0.49
1.6
78.47
38.5

Associated Gene:

Gene:
GNB1
Ensembl Gene ID:
ENSAPLG00000011035
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011534
100002 - 118409
18408