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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1057290_1061254_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1057290 - 1061254
Intron Length:
3965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTTTGTG
5'SS Class:
major
3'SS Sequence:
TTGCTGGCGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATAATAT
U12 Branch Point Sequence:
CGACCCTGATCT
Flanking Amino Acid:
NLCALGSWSSIAEEETEDSI
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.1
59.8
38.9
Major BPS
58.7
0.22
1.1
55.4
40
Major PPT
50.7
0.02
1.2
51.8
42
Minor 5ss
39.4
-1.2
3.3
52.8
44.7
Minor BPS
49
0
1.8
64.48
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027441
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041799
1057258 - 1061729
4472