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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_109191_111237_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109191 - 111237
Intron Length:
2047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GTATCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATGTATCT
Flanking Amino Acid:
IIWDSYTTNKVHAIPLRSSW
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.6
0.6
1
73.2
41.8
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
45.8
-0.2
2.3
73.38
43.5

Associated Gene:

Gene:
GNB1
Ensembl Gene ID:
ENSAPLG00000011035
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011534
100002 - 118409
18408