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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1185849_1189433_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1185849 - 1189433
Intron Length:
3585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
MQQIYYKVIKEIE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
75.1
41.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.7
0.62
0.9
69.3
40.8
Minor 5ss
40.5
-1.1
3.1
57.9
46.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
PRDM16
Ensembl Gene ID:
ENSAPLG00000005898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006119
1185327 - 1231074
45748