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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1198753_1201259_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1198753 - 1201259
Intron Length:
2507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
TCCCCCTTTCTC
Flanking Amino Acid:
DCERMFPNKYSLEQHMVIHT
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.9
38.7
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
89.1
0.88
0.6
84.4
23.4
Minor 5ss
28.4
-2.5
3.6
38.8
46.4
Minor BPS
39
-0.8
3.5
55.46
43.3

Associated Gene:

Gene:
PRDM16
Ensembl Gene ID:
ENSAPLG00000005898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006119
1185327 - 1231074
45748