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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1201408_1201563_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1201408 - 1201563
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCGC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAA
U12 Branch Point Sequence:
GCTCCCTGAAGG
Flanking Amino Acid:
KRFECENCVKVFTDPSNLQR
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
59.1
42.5
Major BPS
57.2
0.18
1.1
48.9
36.6
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
30
-2.3
3.4
42
44.8
Minor BPS
49.3
-0.1
1.9
54.65
45.8

Associated Gene:

Gene:
PRDM16
Ensembl Gene ID:
ENSAPLG00000005898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006119
1185327 - 1231074
45748