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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1215126_1217028_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1215126 - 1217028
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
TTTCACTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGGCTTTCACT
Flanking Amino Acid:
LRKGKERYTCRYCGKIFPRS
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
73.4
0.53
0.9
66.2
40.5
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
60.8
0.42
1.9
79.01
43.8

Associated Gene:

Gene:
PRDM16
Ensembl Gene ID:
ENSAPLG00000005898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006119
1185327 - 1231074
45748