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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1217107_1223147_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1217107 - 1223147
Intron Length:
6041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGTTG
5'SS Class:
major
3'SS Sequence:
TTCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGCAT
U12 Branch Point Sequence:
TTTGCTTCTATT
Flanking Amino Acid:
LRTHTGEQPYRCKYCDRSFS
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
68.4
38.9
Major BPS
59.9
0.25
1.5
71.4
45.1
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
35
-1.7
3.4
46.5
48.8
Minor BPS
50.6
0.1
1.9
75.66
41.6

Associated Gene:

Gene:
PRDM16
Ensembl Gene ID:
ENSAPLG00000005898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006119
1185327 - 1231074
45748