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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1224274_1225566_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1224274 - 1225566
Intron Length:
1293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACAAG
5'SS Class:
major
3'SS Sequence:
CCAAATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
TCCCCATTGACC
Flanking Amino Acid:
MNQASTLADKRPEIQDIDGN
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
62.1
44.1
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
67.3
0.39
1
62.3
42.6
Minor 5ss
36.7
-1.5
3.2
47.3
48.3
Minor BPS
56.4
0.18
1.7
64.54
41.2

Associated Gene:

Gene:
PRDM16
Ensembl Gene ID:
ENSAPLG00000005898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006119
1185327 - 1231074
45748