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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1225798_1228579_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1225798 - 1228579
Intron Length:
2782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CCTGCGTTACTC
Flanking Amino Acid:
SLTMSFDHTRRLMQ*
Intron Amino Acid Position:
976

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
86.3
0.82
0.7
81.2
23.9
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
43.8
-0.4
2.3
52.77
45.8

Associated Gene:

Gene:
PRDM16
Ensembl Gene ID:
ENSAPLG00000005898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006119
1185327 - 1231074
45748