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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_12269_13146_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12269 - 13146
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGAAG
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGCTCTCATGC
Flanking Amino Acid:
DEVWGIHRLYGCRDRLFMCP
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
64.6
40.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.4
0.77
0.8
76.5
37.6
Minor 5ss
31.1
-2.2
3.2
35.8
42.4
Minor BPS
44
-0.4
2
55.37
43

Associated Gene:

Gene:
MMP23B
Ensembl Gene ID:
ENSAPLG00000012333
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012849
7952 - 15233
7282