Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1248341_1248945_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1248341 - 1248945

Intron Length:

605

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAGGAAGG

5'SS Class:

major

3'SS Sequence:

TCCTCTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTAAC

U12 Branch Point Sequence:

GTTGCCTTGCTG

Flanking Amino Acid:

PGFTGAACEKPCPPGTFGES

Intron Amino Acid Position:

1188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.2

0.31

1.4

57.3

47.4

Major BPS

57.1

0.18

1.1

Major PPT

85.3

0.79

0.7

80.1

25.2

Minor 5ss

32.9

-2

3.2

38.9

39.9

Minor BPS

42.2

-0.7

3.5

58.73

43.7

Associated Gene:

Gene:

MEGF6

Ensembl Gene ID:

ENSAPLG00000004881

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005080

1247676 - 1322438

74763