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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1250466_1250583_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1250466 - 1250583
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
CGCGGGGTGACA
Flanking Amino Acid:
AGWTGLACELACAEGRHGAG
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.3
39
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
32.1
-2
3
32.8
41.8
Minor BPS
31.8
-1.4
2.6
37.75
41.6

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763