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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1258694_1258860_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1258694 - 1258860
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TCCTCCCCACCC
Flanking Amino Acid:
PGLYGRYCHLACPKWAFGPG
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
42.3
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
66.8
0.38
0.9
57.9
32.1
Minor 5ss
46
-0.4
3.2
63.6
48.1
Minor BPS
45.8
-0.3
2.1
59.17
45.8

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763