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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1258990_1260043_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1258990 - 1260043
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTCTCTTTATTT
Flanking Amino Acid:
PGVAGPHCEDGCPKGYFGKQ
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.1
0.56
1
68.2
42.1
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
62.4
0.47
1.6
74.81
43.2

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763