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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1260985_1261178_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1260985 - 1261178
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGCATT
5'SS Class:
major
3'SS Sequence:
CCTCCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
AGTGTCTCACCA
Flanking Amino Acid:
RGEHTLSEKFVCLENTFGPD
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1
70.5
41.3
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
77.9
0.63
0.8
71.7
32.7
Minor 5ss
38.6
-1.3
3.4
53.5
45
Minor BPS
46.9
-0.2
1.9
58.17
41.5

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763