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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1261347_1262413_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1261347 - 1262413
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
ACTGCTTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATCTCCATGACT
Flanking Amino Acid:
KLDEDRRGCISIDDPVEALD
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
72.2
37.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
67
0.38
0.9
58.5
37.8
Minor 5ss
38.2
-1.3
3.4
60.6
43.7
Minor BPS
67.7
0.64
1.6
82.75
38.3

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763