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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1264535_1266392_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1264535 - 1266392
Intron Length:
1858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
GCATGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GGATCCTAACCA
Flanking Amino Acid:
ELGADGKQCYRIEMEIVNSC
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
71.8
39.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
72.9
0.51
1
65.4
40.9
Minor 5ss
34.8
-1.7
2.8
48.5
40.3
Minor BPS
49.9
-0
2
61.84
43.8

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763