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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1266516_1266896_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1266516 - 1266896
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCGTCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CTTTTCCTAATT
Flanking Amino Acid:
SLAPDGKACEDVNECLTGLA
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
79.5
0.66
0.8
73.3
31.6
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
67.6
0.63
1.7
83.92
37.4

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763