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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1267723_1275421_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1267723 - 1275421
Intron Length:
7699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCCGATGAATT
Flanking Amino Acid:
RLHTDGRTCIVVNSCAINNG
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.8
40.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.9
0.83
0.7
81.5
23.5
Minor 5ss
37.3
-1.4
3.1
44.3
44.6
Minor BPS
43.5
-0.4
2
59.15
44.2

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763