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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1275545_1310935_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1275545 - 1310935
Intron Length:
35391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCTCTGATTT
Flanking Amino Acid:
AGFQGPRCQFDVDECQVHNG
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
61.4
44.7
Major BPS
79
0.72
1
69
38.9
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
28.3
-2.5
2.7
29.1
37
Minor BPS
56.4
0.28
1.7
77.98
38.5

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763