About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1311041_1318796_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1311041 - 1318796
Intron Length:
7756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCCCTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATCTCCAGAGTT
Flanking Amino Acid:
QLAGDAGCLHPACSAGVCFN
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
70.1
40.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
79.1
0.66
0.7
73
25.2
Minor 5ss
38.9
-1.3
2.7
51.9
37.5
Minor BPS
47.5
-0.1
1.9
68.44
42.4

Associated Gene:

Gene:
MEGF6
Ensembl Gene ID:
ENSAPLG00000004881
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005080
1247676 - 1322438
74763