About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1334818_1335570_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1334818 - 1335570

Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTAAGACAT

5'SS Class:
strong_major

3'SS Sequence:
CTTTTGGGGACAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTAAT

U12 Branch Point Sequence:
ATGTTTCTAATT

Flanking Amino Acid:
FVCSDWQLLRHFDTETQDLF

Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.5
0.74
1
71.6
40.1

Major BPS
94.5
1.11
0.6
92.2
14.6

Major PPT
64
0.32
1.2
60.2
44.9

Minor 5ss
33.2
-1.9
3.2
40.2
45.4

Minor BPS
58
0.33
1.6
74.11
37.4

Associated Gene:

Gene:
WRAP73

Ensembl Gene ID:

Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1330039 - 1344049
14011

1330374 - 1344049
13676