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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1351202_1358173_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1351202 - 1358173
Intron Length:
6972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGTA
5'SS Class:
major
3'SS Sequence:
TCCCTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
QLRGINDSVMSQFNLLNNSM
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
70.2
35.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81.1
0.7
0.7
72.9
32
Minor 5ss
34.6
-1.8
3.4
43.1
45.5
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
TP73
Ensembl Gene ID:
ENSAPLG00000003880
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018072
1347771 - 1379744
31974
ENSAPLT00000004016
1342818 - 1377882
35065