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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1374585_1375559_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1374585 - 1375559
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
ATTTTCCAAATT
Flanking Amino Acid:
PPYNPDPSLVSFLTGLGCPN
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
90
0.9
0.7
85.5
28.4
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
54.7
0.23
2
78.43
38.2

Associated Gene:

Gene:
TP73
Ensembl Gene ID:
ENSAPLG00000003880
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018072
1347771 - 1379744
31974
ENSAPLT00000004016
1342818 - 1377882
35065