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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1389851_1390154_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1389851 - 1390154
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTGTC
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTTACA
Flanking Amino Acid:
LLKGSGDAELYTEMEQDSSN
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
72.3
37.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
92
0.94
0.6
87.3
23.2
Minor 5ss
42.9
-0.8
3.2
57.9
42.1
Minor BPS
70.2
0.63
1.6
78.71
37.7

Associated Gene:

Gene:
CCDC27
Ensembl Gene ID:
ENSAPLG00000003870
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003963
1389123 - 1392943
3821