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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1391935_1392583_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1391935 - 1392583
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
CTTTTATCAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTTTATCAAAA
Flanking Amino Acid:
RVALECLTSRFERFRSKIIQ
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74
36.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
66.9
0.38
1.1
68.9
35.2
Minor 5ss
34.9
-1.7
2.7
35
41
Minor BPS
49.4
-0
1.9
65.82
40.3

Associated Gene:

Gene:
CCDC27
Ensembl Gene ID:
ENSAPLG00000003870
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003963
1389123 - 1392943
3821