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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1392689_1392805_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1392689 - 1392805
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTCTTTGATT
Flanking Amino Acid:
TDEEVLEAMQKIINERIEFH
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.4
39.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.3
0.77
0.8
81.1
35.5
Minor 5ss
35
-1.7
2.9
45.9
42.2
Minor BPS
72.1
0.78
1.1
80.58
35.7

Associated Gene:

Gene:
CCDC27
Ensembl Gene ID:
ENSAPLG00000003870
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003963
1389123 - 1392943
3821