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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1394676_1395615_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1394676 - 1395615
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCGCTTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TCGCTTGTAACA
Flanking Amino Acid:
CKDVMDTLILKIAELNKFTL
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
69.5
0.44
1
64.9
40.1
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
48.3
-0.1
2
59.36
41.2

Associated Gene:

Gene:
LRRC47
Ensembl Gene ID:
ENSAPLG00000003167
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003212
1394436 - 1400555
6120