About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1396220_1397113_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1396220 - 1397113
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTTTTGATT
Flanking Amino Acid:
KKRQNVSGLHKYLQLLDGKD
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.3
84.6
33.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.2
0.88
0.8
88.3
28.9
Minor 5ss
38.8
-1.3
2.9
52.7
37.9
Minor BPS
72.6
0.79
1
84.08
30.1

Associated Gene:

Gene:
LRRC47
Ensembl Gene ID:
ENSAPLG00000003167
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003212
1394436 - 1400555
6120