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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1397230_1398832_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1397230 - 1398832
Intron Length:
1603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
TTGTATGGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTCTTGTATG
Flanking Amino Acid:
YDVQPPGELKITPLGRKEIK
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
66.7
0.38
1.1
62.1
44.1
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
55.5
0.03
1.9
67.79
40.1

Associated Gene:

Gene:
LRRC47
Ensembl Gene ID:
ENSAPLG00000003167
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003212
1394436 - 1400555
6120